Publications


S.Gulyanon, N. Sharifai, M.D. Kim, A. Chiba, and G. Tsechpenakis, "CRF formulation of active contour population for efficient three-dimensional neurite tracing," Int'l Symposium on Biomedical Imaging: from Nano to Macro (ISBI), Prague, Czech Republic, 2016.

S. Farhand, S.Gulyanon, N. Sharifai, M.D. Kim, A. Chiba, and G. Tsechpenakis, "Temporal neurite registration using hierarchical alignments," Int'l Symposium on Biomedical Imaging: from Nano to Macro (ISBI), Prague, Czech Republic, 2016.

S. Gulyanon, N. Sharifai, S. Bleykhman, E. Kelly, M.D. Kim, A. Chiba, and G. Tsechpenakis, "Three-dimensional neurite tracing under globally varying contrast," Int'l Symposium on Biomedical Imaging: from Nano to Macro (ISBI), Brooklyn, NY, 2015.

N. Hammes, L. Racette, B.C. Samuels, and G. Tsechpenakis, "Retinal thickness estimation from SD-OCT Macular scans," Int'l Symposium on Biomedical Imaging: from Nano to Macro (ISBI), Brooklyn, NY, 2015.

X. Chang, M.D Kim, R. Stephens, T. Qu, A. Chiba, and G. Tsechpenakis, "Part-based motor neuron recognition in the Drosophila ventral nerve cord", Elsevier NeuroImage, 90:33-42, 2014.

X. Chang, M.D Kim, R. Stephens, T. Qu, A. Chiba, and G. Tsechpenakis, "Neuron Recognition with Hidden Neural Network Random fields", Int'l Symposium on Biomedical Imaging: from Nano to Macro (ISBI), Beijing, China, 2014.

P. Mukherjee, M.D Kim, A. Chiba, and G. Tsechpenakis, "Active Geometric Model: Application to neuron morphology estimation in the Drosophila ventral nerve cord", Int'l Conference on Image Processing (ICIP), Melbourne, Australia, 2013.

X. Chang, M.D. Kim, A. Chiba, and G. Tsechpenakis, "Motor Neuron Recognition in the Drosophila Ventral Nerve Cord," Int'l Symposium on Biomedical Imaging: from Nano to Macro (ISBI), San Francisco, CA, USA, 2013.

X. Chang, M.D. Kim, A. Chiba, and G. Tsechpenakis, "Patterning Motor Neurons in the Drosophila Ventral Nerve Cord using Latent State Conditional Random Fields," Int'l Symposium on Biomedical Imaging: from Nano to Macro (ISBI), Barcelona, Spain, 2012.

G. Tsechpenakis, P Mukherjee, M. D. Kim, and A. Chiba, "Three-dimensional Motor Neuron Morphology Estimation in the Drosophila Ventral Nerve Cord," IEEE Trans on Biomedical Engineering, 59(5), pp. 1253-1263, 2012.

S.P. Chatzis and G. Tsechpenakis, "A Possibilistic Clustering Approach Towards Generative Mixture Models," Pattern Recognition, 45(5), pp. 1819-1825, 2012.

G. Tsechpenakis, R. Egoda Gamage, M.D. Kim and A. Chiba, "Motor Neuron Morphology Estimation for its Classification in the Drosophila Brain," IEEE Engineering in Medicine and Biology Conference, Boston, MA, Sept. 2011.

G. Tsechpenakis and S.P. Chatzis, "Deformable Probability Maps: Probabilistic Shape and Appearance-based Object Segmentation," Computer Vision and Image Understanding, 115(8), pp. 1157-1169, 2011.

X. Chang, A. Kale, L. Dodge, J. Brazill, M.D. Kim, and G. Tsechpenakis, "Computer-aided Estimation of the Motor Neuron Morphology Patterns," Drosophila Genetics, Chicago, IL, 2012. [abstract--selected for platform presentation]

P. Mukherjee, J. Brazill, M.D. Kim, and G. Tsechpenakis, "Description and Visualization of Motor Neuron Morphology in Three Dimensions," Drosophila Genetics, Chicago, IL, 2012. [abstract]

J. Brazill, X. Chang, G. Tsechpenakis, and M.D. Kim, "Identification of genes that regulate patterning in motor neuron dendrites," Neurobiology of Drosophila, Cold Spring Harbor Laboratory, NY, 2011. [abstract]

G. Tsechpenakis, H. Samarajeewa, M. Kim, A. Chiba, "Model Neurons of isPIN," 52nd Annual Drosophila Research Conference, San Diego, CA, March 2011. [abstract]

J.D. Baker, J. Bixby, W. Buchser, M. Blulina, X. Cai, S. Deng, V. Gupta, N. Johnson, T. Kagesawa, D. Kamiyama, M. Kim, V. Lemmon, T. Li, M. Ogihara, H. Samarajeewa, N. Sharifai, R. Smith, G. Tsechpenakis, G. Zhai, A. Chiba, "The isPIN Project," 52nd Annual Drosophila Research Conference, San Diego, CA, March 2011. [abstract]